Mikro:
Less customising can be done.
Has no built in midi outputs, so can only use the USB to your laptop and not attach a midi master keyboard for example.
Mikro has no direct push button access to group functions and you need to access the groups via a secondary key shortcut.
Mikro cannot adjust multiple parameters at once, but you can add a secondary midi controller and do it from there.
So all in all I would get the standard maschine if you care about those functions. If you just want to play around and use it as an F1 on steroids, then go for the micro.
As for Mk I or II: If you like multi colored lights then go for Mk II, I can do without them, but the Mk II is more fancy.