I am sure there is a techie or someone that has access to the inputs on that unit (they are, as opposed to 99% of the mixers, not on the back but on the bottom of the unit if I am not mistaken. This is a mixer you would typically find behind a bar in a 19″ upright rack. If it’s fitted flat, you should easily be able to reach the inputs from below (cabinet door, access panel or something?).
I don’t think any self-respecting place will build-in their gear in such a way that they can’t get to the business end of things quickly in case something goes wrong.
About the FX use I am not 100% sure at what point in the routing the FX are added in Traktor. I think that FX only work when in internal mixing mode, but that won’t work with CDJs in HID mode as the sound of each track will come out through the CDJ sound cards.
I might be wrong, so hopefully a recent Traktor user has experience with this issue.